try a partition manager boot disk, like paragon or partition magic. then check for partiton problems, also check its cloned it and not copied it to a fat32 partition or something daft
intel i7 3770k @4.4, ASRock Z77 Extreme 4, 16GB Corsiar Vengance 1600 ram, ATI 5850 BE, Antec 1 Case, Antec 1 550W PSU, emu0404, 120gb agility3 ssd OS, 2x60gbvertex2raid0 Games, 3 TB total sata2 Data. win7 x64.